Transcript: lnc-RIOX1-3:2

Basic information

LNCipedia transcript ID: lnc-RIOX1-3:2 
LNCipedia gene ID: lnc-RIOX1-3
Ensembl Gene ID: ENSG00000251393
Ensembl Transcript ID: ENST00000561382
Location (hg19): chr14:73929204-73930585
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561382.1; RP1-240K6.3-002; OTTHUMT00000415539.1; NONHSAT037707
Alternative gene names: ENSG00000251393.3; RP1-240K6.3; OTTHUMG00000171606.2; AC005280.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -558.2786 non-coding 
CPAT coding probability 7.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIOX1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACOT1-3:3
4.0 lnc-ACOT1-3:3
4.1 lnc-ACOT1-3:3
5.0 lnc-ACOT1-3:3
5.1 lnc-ACOT2-4:3
5.2 lnc-RIOX1-3:2