Transcript: lnc-RIPK1-159:1

Basic information

LNCipedia transcript ID: lnc-RIPK1-159:1 
LNCipedia gene ID: lnc-RIPK1-159
Location (hg19): chr6:3026411-3027751
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1268 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011649; NONHSAT106937
Alternative gene names: XLOC_005131; linc-FAM136B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.1093 non-coding 
CPAT coding probability 2.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIPK1-159:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NQO2-1:1
3.1 lnc-NQO2-2:2
4.0 lnc-NQO2-2:2
4.1 lnc-NQO2-2:2
5.0 lnc-NQO2-2:2
5.1 lnc-RIPK1-10:1
5.2 lnc-RIPK1-159:1