Transcript: lnc-RIT2-2:11

Basic information

LNCipedia transcript ID: lnc-RIT2-2:11 
LNCipedia gene ID: lnc-RIT2-2
Location (hg19): chr18:39047395-39061032
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT059044; ENST00000600644.1
Alternative gene names: ENSG00000267313.2; RP11-142I20.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.5903 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIT2-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RIT2-2:11
4.0 lnc-RIT2-2:11
4.1 lnc-RIT2-2:11
5.0 lnc-RIT2-2:11
5.1 lnc-SMAD2-53:13
5.2 lnc-RIT2-2:11