Transcript: lnc-RIT2-2:4

Basic information

LNCipedia transcript ID: lnc-RIT2-2:4 
LNCipedia gene ID: lnc-RIT2-2
Ensembl Gene ID: ENSG00000267313
Ensembl Transcript ID: ENST00000599934
Location (hg19): chr18:39101302-39212088
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 556 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059053; ENST00000599934.1
Alternative gene names: ENSG00000267313.2; RP11-142I20.1; ENSG00000267313.7; KC6; AC021504.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -240.4776 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIT2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RIT2-2:4
4.0 lnc-RIT2-2:4
4.1 lnc-RIT2-2:4
5.0 lnc-RIT2-2:4
5.1 lnc-SMAD2-53:4
5.2 lnc-RIT2-2:4