Transcript: lnc-RIT2-2:7

Basic information

LNCipedia transcript ID: lnc-RIT2-2:7 
LNCipedia gene ID: lnc-RIT2-2
Ensembl Gene ID: ENSG00000267313
Ensembl Transcript ID: ENST00000601523
Location (hg19): chr18:39093652-39100641
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059049; ENST00000601523.1; ENST00000601523.5
Alternative gene names: ENSG00000267313.2; RP11-142I20.1; ENSG00000267313.7; KC6; AC021504.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -217.266 non-coding 
CPAT coding probability 6.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIT2-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RIT2-2:7
4.0 lnc-RIT2-2:7
4.1 lnc-RIT2-2:7
5.0 lnc-RIT2-2:7
5.1 lnc-SMAD2-53:7
5.2 lnc-RIT2-2:7