Transcript: lnc-RNASE13-1:1

Basic information

LNCipedia transcript ID: lnc-RNASE13-1:1 
LNCipedia gene ID: lnc-RNASE13-1
Location (hg19): chr14:21510241-21514097
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2860 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000554568; ENST00000554568.1; AL161668.12-001; OTTHUMT00000413121.1; NONHSAT035646
Alternative gene names: ENSG00000258523; AL161668.12; ENSG00000258523.1; OTTHUMG00000149924.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.5929 non-coding 
CPAT coding probability 15.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNASE13-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNASE13-1:1
3.1 lnc-RNASE13-1:1
4.0 lnc-RNASE13-1:1
4.1 lnc-RNASE13-1:1
5.0 lnc-RNASE13-1:1
5.1 lnc-ZNF219-2:1
5.2 lnc-RNASE13-1:1