Transcript: lnc-RNASE7-1:2

Basic information

LNCipedia transcript ID: lnc-RNASE7-1:2 
LNCipedia gene ID: lnc-RNASE7-1
Ensembl Gene ID: ENSG00000258604
Ensembl Transcript ID: ENST00000532213
Location (hg19): chr14:21492455-21497430
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 469 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532213; ENST00000532213.2; AL161668.5-002; OTTHUMT00000387893.2; NONHSAT035643
Alternative gene names: ENSG00000258604; AL161668.5; ENSG00000258604.1; OTTHUMG00000029642.5; AL161668.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.0405 non-coding 
CPAT coding probability 10.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNASE7-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-998D10.1.1-1:2
3.1 lnc-RP11-998D10.1.1-1:2
4.0 lnc-RP11-998D10.1.1-1:2
4.1 lnc-RP11-998D10.1.1-1:2
5.0 lnc-RP11-998D10.1.1-1:2
5.1 lnc-OR4K15-41:2
5.2 lnc-RNASE7-1:2