Transcript: lnc-RNASEH1-1:8

Basic information

LNCipedia transcript ID: lnc-RNASEH1-1:8 
LNCipedia gene ID: lnc-RNASEH1-1
Location (hg19): chr2:3579405-3584463
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 789 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00002736
Alternative gene names: XLOC_001952; linc-ADI1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.2187 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNASEH1-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP13-512J5.1.1-1:1
3.1 lnc-RP13-512J5.1.1-1:2
4.0 lnc-RP13-512J5.1.1-1:2
4.1 lnc-RP13-512J5.1.1-1:2
5.0 lnc-RP13-512J5.1.1-1:2
5.1 lnc-RAD51AP2-180:2
5.2 lnc-RNASEH1-1:8