Transcript: lnc-RNF13-3:7

Basic information

LNCipedia transcript ID: lnc-RNF13-3:7 
LNCipedia gene ID: lnc-RNF13-3
Ensembl Gene ID: ENSG00000242791
Ensembl Transcript ID: ENST00000323689
Location (hg19): chr3:149695885-149697142
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 331 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000323689; ENST00000323689.9; RP11-651P23.5-001; OTTHUMT00000357121.1; NONHSAT092668
Alternative gene names: ENSG00000242791; RP11-651P23.5; ENSG00000242791.2; OTTHUMG00000159743.1; AC117395.3; AC117395.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.0313 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF13-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF13-1:2
3.1 lnc-RNF13-1:2
4.0 lnc-RNF13-1:2
4.1 lnc-RNF13-3:7
5.0 lnc-RNF13-3:7
5.1 lnc-TM4SF4-7:7
5.2 lnc-RNF13-3:7