Transcript: lnc-RNF135-1:27

Basic information

LNCipedia transcript ID: lnc-RNF135-1:27 
LNCipedia gene ID: lnc-RNF135-1
Location (hg19): chr17:28959140-28964482
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4740 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000417404.1; LRRC37BP1-003; OTTHUMT00000256203.1
Alternative gene names: ENSG00000214719.5; LRRC37BP1; OTTHUMG00000132793.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.3134 non-coding 
CPAT coding probability 68.49% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF135-1:27 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBC1D29-1:6
4.0 lnc-RNF135-1:27
4.1 lnc-RNF135-1:27
5.0 lnc-RNF135-1:27
5.1 lnc-NSRP1-30:29
5.2 lnc-RNF135-1:27