Transcript: lnc-RNF19A-1:2

Basic information

LNCipedia transcript ID: lnc-RNF19A-1:2 
LNCipedia gene ID: lnc-RNF19A-1
Ensembl Gene ID: ENSG00000253824
Ensembl Transcript ID: ENST00000523870
Location (hg19): chr8:101393702-101408441
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 492 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523870; ENST00000523870.1; KB-173C10.2-002; OTTHUMT00000379859.1; NONHSAT127992; FPKM1_group_31872_transcript_1
Alternative gene names: ENSG00000253824; KB-173C10.2; ENSG00000253824.1; OTTHUMG00000164708.1; AP003472.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.3006 non-coding 
CPAT coding probability 4.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF19A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF19A-1:2
3.1 lnc-RNF19A-1:2
4.0 lnc-RNF19A-1:2
4.1 lnc-RNF19A-1:2
5.0 lnc-RNF19A-1:2
5.1 lnc-ZNF706-31:2
5.2 lnc-RNF19A-1:2