Transcript: lnc-RNF227-1:3

Basic information

LNCipedia transcript ID: lnc-RNF227-1:3 
LNCipedia gene ID: lnc-RNF227-1
RefSeq ID: NR_024349
Location (hg19): chr17:7816640-7819265
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2525 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024349; NR_024349.1
Alternative gene names: LOC284023


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 525.9935 coding 
CPAT coding probability 44.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF227-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNAB3-1:3
4.0 lnc-KCNAB3-1:3
4.1 lnc-KCNAB3-1:3
5.0 lnc-KCNAB3-1:3
5.1 lnc-YBX2-27:3
5.2 lnc-RNF227-1:3