Transcript: lnc-RNFT2-2:1

Basic information

LNCipedia transcript ID: lnc-RNFT2-2:1 
LNCipedia gene ID: lnc-RNFT2-2
Ensembl Gene ID: ENSG00000257654
Ensembl Transcript ID: ENST00000552718
Location (hg19): chr12:117136141-117140935
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552718; ENST00000552718.1; RP11-497G19.2-001; OTTHUMT00000403838.1; NONHSAT030960
Alternative gene names: ENSG00000257654; RP11-497G19.2; ENSG00000257654.1; OTTHUMG00000169386.1; AC125603.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.7377 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNFT2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNFT2-2:1
3.1 lnc-RNFT2-2:1
4.0 lnc-RNFT2-2:1
4.1 lnc-RNFT2-2:1
5.0 lnc-RNFT2-2:1
5.1 lnc-MAP1LC3B2-2:8
5.2 lnc-RNFT2-2:1