Transcript: lnc-RNGTT-2:1

Basic information

LNCipedia transcript ID: lnc-RNGTT-2:1 
LNCipedia gene ID: lnc-RNGTT-2
RefSeq ID: NR_110867
Location (hg19): chr6:89235643-89249088
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3974 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110867; NR_110867.1
Alternative gene names: LOC101928936


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 22.0578 non-coding 
CPAT coding probability 48.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNGTT-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNGTT-2:1
4.0 lnc-RNGTT-2:1
4.1 lnc-RNGTT-2:1
5.0 lnc-RNGTT-2:1
5.1 lnc-CNR1-3:1
5.2 lnc-RNGTT-2:1