Transcript: lnc-ROBO2-3:2

Basic information

LNCipedia transcript ID: lnc-ROBO2-3:2 
LNCipedia gene ID: lnc-ROBO2-3
Ensembl Gene ID: ENSG00000240241
Ensembl Transcript ID: ENST00000461528
Location (hg19): chr3:78316093-78343206
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 542 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005547; ENST00000461528; ENST00000461528.1; RP11-314M24.1-001; OTTHUMT00000352621.1; NONHSAT090576; ENST00000461528.5
Alternative gene names: XLOC_002715; linc-CADM2-9; ENSG00000240241; RP11-314M24.1; ENSG00000240241.1; OTTHUMG00000158945.1; ENSG00000240241.5; AC108752.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.6918 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ROBO2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROBO2-3:2
3.1 lnc-ROBO2-3:2
4.0 lnc-ROBO2-3:2
4.1 lnc-ROBO2-3:2
5.0 lnc-ROBO2-3:2
5.1 lnc-ROBO2-3:2
5.2 lnc-ROBO2-3:2