Transcript: lnc-ROPN1B-5:1

Basic information

LNCipedia transcript ID: lnc-ROPN1B-5:1 
LNCipedia gene ID: lnc-ROPN1B-5
Location (hg19): chr3:125366455-125369330
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 607 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006195; NONHSAT091603
Alternative gene names: XLOC_002792; linc-ROPN1B-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.9101 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ROPN1B-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROPN1B-2:2
3.1 lnc-ROPN1B-5:1
4.0 lnc-ROPN1B-5:1
4.1 lnc-ROPN1B-5:1
5.0 lnc-ROPN1B-5:1
5.1 lnc-CFAP100-24:2
5.2 lnc-ROPN1B-5:1