Transcript: lnc-RP1-1:16

Basic information

LNCipedia transcript ID: lnc-RP1-1:16 
LNCipedia gene ID: lnc-RP1-1
Ensembl Gene ID: ENSG00000253857
Ensembl Transcript ID: ENST00000520251
Location (hg19): chr8:56076683-56077287
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 376 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520251.1
Alternative gene names: ENSG00000253857.1; RP11-386G21.2; AC022679.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -225.2037 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RP1-1:16 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-386G21.2.1-1:2
4.1 lnc-RP11-386G21.2.1-1:2
5.0 lnc-RP11-386G21.2.1-1:2
5.1 lnc-SDCBP-60:2
5.2 lnc-RP1-1:16