Transcript: lnc-RPA3-2:1

Basic information

LNCipedia transcript ID: lnc-RPA3-2:1 
LNCipedia gene ID: lnc-RPA3-2
Location (hg19): chr7:7778165-7782204
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1050 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT119132; ENST00000418534.2
Alternative gene names: ENSG00000234718.5; AC007161.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 63.3753 coding 
CPAT coding probability 9.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RPA3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPA3-2:1
4.0 lnc-RPA3-2:1
4.1 lnc-RPA3-2:1
5.0 lnc-RPA3-2:1
5.1 lnc-RNF216-37:3
5.2 lnc-RPA3-2:1