Transcript: lnc-RPF1-3:3

Basic information

LNCipedia transcript ID: lnc-RPF1-3:3 
LNCipedia gene ID: lnc-RPF1-3
Ensembl Gene ID: ENSG00000285361
Ensembl Transcript ID: ENST00000644783
Location (hg19): chr1:84942722-84944840
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1318 bp
Exons: 2
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000644783.1
Alternative gene names: ENSG00000285361.1; AL844170.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -80.1854 non-coding 
CPAT coding probability 2.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPF1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SAMD13-3:1
5.1 lnc-SAMD13-3:1
5.2 lnc-RPF1-3:3