Transcript: lnc-RPH3AL-1:7

Basic information

LNCipedia transcript ID: lnc-RPH3AL-1:7 
LNCipedia gene ID: lnc-RPH3AL-1
Ensembl Gene ID: ENSG00000241525
Ensembl Transcript ID: ENST00000599026
Location (hg19): chr17:254332-259822
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 887 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT144708; ENST00000599026.1
Alternative gene names: ENSG00000241525.3; AC108004.3; ENSG00000241525.4; AC141424.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.0723 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPH3AL-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM101B-1:2
4.0 lnc-FAM101B-1:2
4.1 lnc-FAM101B-1:2
5.0 lnc-FAM101B-1:2
5.1 lnc-RPH3AL-1:4
5.2 lnc-RPH3AL-1:7