Transcript: lnc-RPL17-3:1

Basic information

LNCipedia transcript ID: lnc-RPL17-3:1 
LNCipedia gene ID: lnc-RPL17-3
Location (hg19): chr18:47086717-47088251
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1535 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000037523.1|FTMT27000003610.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -136.4862 non-coding 
CPAT coding probability 5.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPL17-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RPL17-3:1
5.0 lnc-RPL17-3:1
5.1 lnc-DYM-3:3
5.2 lnc-RPL17-3:1