Transcript: lnc-RPL27A-5:1

Basic information

LNCipedia transcript ID: lnc-RPL27A-5:1 
LNCipedia gene ID: lnc-RPL27A-5
Location (hg19): chr11:8739731-8741032
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 510 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000001498.1|FTMT24300021354.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -232.9554 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPL27A-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RPL27A-5:1
5.0 lnc-RPL27A-5:1
5.1 lnc-AKIP1-11:1
5.2 lnc-RPL27A-5:1