Transcript: lnc-RPLP1-12:38

Basic information

LNCipedia transcript ID: lnc-RPLP1-12:38 
HGNC Gene Symbol: lnc-RPLP1-12    
HGNC Full Gene Name: prostate cancer associated transcript 29
Ensembl Gene ID: ENSG00000245750
Ensembl Transcript ID: ENST00000558411
Location (hg19): chr15:69884468-69905229
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2121 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505880; TCONS_00023235; ENST00000558411.1; RP11-279F6.3-001; OTTHUMT00000416822.1; NONHSAT046972
Alternative gene names: ENSG00000248263; XLOC_011295; linc-LRRC49-3; ENSG00000259641.1; RP11-279F6.3; OTTHUMG00000172099.1; ENSG00000259641.5; PCAT29; ; ENSG00000245750.8; DRAIC


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.8423 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPLP1-12:38 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open
  2. Sakurai (2015), The lncRNA DRAIC/PCAT29 Locus Constitutes a Tumor-Suppressive Nexus., Mol. Cancer Res.
  3. Malik (2014), The lncRNA PCAT29 inhibits oncogenic phenotypes in prostate cancer., Mol. Cancer Res.
  4. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPLP1-2:1
3.1 lnc-RPLP1-2:1
4.0 PCAT29:1
4.1 PCAT29:1
5.0 PCAT29:1
5.1 lnc-NOX5-12:38
5.2 lnc-RPLP1-12:38