Transcript: lnc-RPLP1-12:52

Basic information

LNCipedia transcript ID: lnc-RPLP1-12:52 
LNCipedia gene ID: lnc-RPLP1-12
RefSeq ID: NR_026764
Location (hg19): chr15:70127573-70135306
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1330 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026764; NR_026764.1
Alternative gene names: MGC42951; LINC00593


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.2649 non-coding 
CPAT coding probability 4.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPLP1-12:52 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open
  2. Sakurai (2015), The lncRNA DRAIC/PCAT29 Locus Constitutes a Tumor-Suppressive Nexus., Mol. Cancer Res.
  3. Malik (2014), The lncRNA PCAT29 inhibits oncogenic phenotypes in prostate cancer., Mol. Cancer Res.
  4. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPLP1-3:4
4.0 LINC00593:3
4.1 LINC00593:3
5.0 LINC00593:3
5.1 lnc-NOX5-12:52
5.2 lnc-RPLP1-12:52