Transcript: lnc-RPP40-2:1

Basic information

LNCipedia transcript ID: lnc-RPP40-2:1 
LNCipedia gene ID: lnc-RPP40-2
Ensembl Gene ID: ENSG00000236336
Ensembl Transcript ID: ENST00000436283
Location (hg19): chr6:4774760-4775642
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 369 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436283.1; RP3-430A16.1-001; OTTHUMT00000346867.1; NONHSAT107488
Alternative gene names: ENSG00000236336.1; RP3-430A16.1; OTTHUMG00000156967.1; AL022725.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -517.4969 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP40-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPP40-2:1
4.0 lnc-RPP40-2:1
4.1 lnc-RPP40-2:1
5.0 lnc-RPP40-2:1
5.1 lnc-ECI2-51:1
5.2 lnc-RPP40-2:1