Transcript: lnc-RPRD1A-2:2

Basic information

LNCipedia transcript ID: lnc-RPRD1A-2:2 
LNCipedia gene ID: lnc-RPRD1A-2
Ensembl Gene ID: ENSG00000267627
Ensembl Transcript ID: ENST00000586982
Location (hg19): chr18:33531766-33545803
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 453 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT058949; ENST00000586982.1; ENST00000586982.5
Alternative gene names: ENSG00000267627.1; RP11-905K4.1; ENSG00000267627.5; AC118757.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.1666 non-coding 
CPAT coding probability 5.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPRD1A-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPRD1A-2:2
4.0 lnc-RPRD1A-2:2
4.1 lnc-RPRD1A-2:2
5.0 lnc-RPRD1A-2:2
5.1 lnc-SMAD2-85:5
5.2 lnc-RPRD1A-2:2