Transcript: lnc-RPRD1A-5:3

Basic information

LNCipedia transcript ID: lnc-RPRD1A-5:3 
LNCipedia gene ID: lnc-RPRD1A-5
Location (hg19): chr18:33529175-33530491
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1317 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000037287.1|FTMT27000002461.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -46.553 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPRD1A-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RPRD1A-5:3
5.0 lnc-RPRD1A-5:3
5.1 lnc-SMAD2-88:4
5.2 lnc-RPRD1A-5:3