Transcript: lnc-RPRM-1:3

Basic information

LNCipedia transcript ID: lnc-RPRM-1:3 
LNCipedia gene ID: lnc-RPRM-1
Ensembl Gene ID: ENSG00000227400
Ensembl Transcript ID: ENST00000454537
Location (hg19): chr2:154278199-154306332
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 427 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454537.1; AC012501.2-002; OTTHUMT00000332580.1; NONHSAT075004
Alternative gene names: ENSG00000227400.2; AC012501.2; OTTHUMG00000153821.1; AC012501.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.1468 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPRM-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPRM-1:3
4.0 lnc-RPRM-1:3
4.1 lnc-RPRM-1:3
5.0 lnc-RPRM-1:3
5.1 lnc-MMADHC-52:3
5.2 lnc-RPRM-1:3