Transcript: lnc-RPRM-3:1

Basic information

LNCipedia transcript ID: lnc-RPRM-3:1 
LNCipedia gene ID: lnc-RPRM-3
Ensembl Gene ID: ENSG00000224675
Ensembl Transcript ID: ENST00000434635
Location (hg19): chr2:155292365-155313950
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2362 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434635.1; AC009227.2-001; OTTHUMT00000332683.1
Alternative gene names: ENSG00000224675.1; AC009227.2; OTTHUMG00000153848.1; AC009227.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.0743 non-coding 
CPAT coding probability 4.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPRM-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPRM-3:1
4.0 lnc-RPRM-3:1
4.1 lnc-RPRM-3:1
5.0 lnc-RPRM-3:1
5.1 lnc-MMADHC-61:1
5.2 lnc-RPRM-3:1