Transcript: lnc-RPRML-3:7

Basic information

LNCipedia transcript ID: lnc-RPRML-3:7 
LNCipedia gene ID: lnc-RPRML-3
Ensembl Gene ID: ENSG00000262879
Ensembl Transcript ID: ENST00000575173
Location (hg19): chr17:45095413-45144903
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1081 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575173.1; RP11-156P1.3-009; OTTHUMT00000440924.1; NONHSAT054243
Alternative gene names: ENSG00000262879.1; RP11-156P1.3; OTTHUMG00000178188.1; ENSG00000262879.5; AC068152.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.4765 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPRML-3:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPRML-3:7
4.0 lnc-RPRML-3:7
4.1 lnc-RPRML-3:7
5.0 lnc-RPRML-3:7
5.1 lnc-GFAP-56:13
5.2 lnc-RPRML-3:7