Transcript: lnc-RPS16-4:1

Basic information

LNCipedia transcript ID: lnc-RPS16-4:1 
LNCipedia gene ID: lnc-RPS16-4
Location (hg19): chr19:39930694-39936127
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5434 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000040957.1|ENCT00000214736.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.9991 non-coding 
CPAT coding probability 10.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS16-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RPS16-1:2
5.0 lnc-RPS16-1:2
5.1 lnc-FBXO27-14:1
5.2 lnc-RPS16-4:1