Transcript: lnc-RPS21-2:1

Basic information

LNCipedia transcript ID: lnc-RPS21-2:1 
LNCipedia gene ID: lnc-RPS21-2
Location (hg19): chr20:61004604-61006568
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000433121; ENST00000433121.1; RP5-908M14.5-001; OTTHUMT00000080037.1; NONHSAT080745
Alternative gene names: ENSG00000233017; RP5-908M14.5; ENSG00000233017.1; OTTHUMG00000032918.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.9504 non-coding 
CPAT coding probability 29.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS21-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS21-1:1
3.1 lnc-RPS21-2:1
4.0 lnc-RPS21-2:1
4.1 lnc-RPS21-2:1
5.0 lnc-RPS21-2:1
5.1 lnc-GNAS-39:7
5.2 lnc-RPS21-2:1