Transcript: lnc-RPS24-3:1

Basic information

LNCipedia transcript ID: lnc-RPS24-3:1 
LNCipedia gene ID: lnc-RPS24-3
Location (hg19): chr10:80008497-80311112
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1267 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000546103; ENST00000546103.1; RP11-90J7.3-201; NONHSAT015059
Alternative gene names: ENSG00000230417; RP11-90J7.3; ENSG00000230417.4; OTTHUMG00000018555.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.913 non-coding 
CPAT coding probability 64.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RPS24-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZMIZ1-1:1
3.1 lnc-RPS24-3:1
4.0 lnc-RPS24-3:1
4.1 lnc-RPS24-3:1
5.0 lnc-RPS24-3:1
5.1 lnc-MTRNR2L5-236:17
5.2 lnc-RPS24-3:1