Transcript: lnc-RPS24-3:2

Basic information

LNCipedia transcript ID: lnc-RPS24-3:2 
LNCipedia gene ID: lnc-RPS24-3
Location (hg19): chr10:80008497-80310446
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 607 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000429250; ENST00000429250.2; RP11-90J7.3-004; OTTHUMT00000363545.1; NONHSAT015060
Alternative gene names: ENSG00000230417; RP11-90J7.3; ENSG00000230417.4; OTTHUMG00000018555.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -238.2973 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS24-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZMIZ1-1:2
3.1 lnc-RPS24-3:2
4.0 lnc-RPS24-3:2
4.1 lnc-RPS24-3:2
5.0 lnc-RPS24-3:2
5.1 lnc-MTRNR2L5-236:18
5.2 lnc-RPS24-3:2