Transcript: lnc-RPS27L-9:10

Basic information

LNCipedia transcript ID: lnc-RPS27L-9:10 
LNCipedia gene ID: lnc-RPS27L-9
Ensembl Gene ID: ENSG00000259370
Ensembl Transcript ID: ENST00000558888
Location (hg19): chr15:63119874-63127596
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7427 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558888.2
Alternative gene names: ENSG00000259370.2; RP11-1069G10.1; AC103740.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.4195 non-coding 
CPAT coding probability 2.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS27L-9:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-625H11.1.1-3:5
4.1 lnc-RP11-625H11.1.1-3:5
5.0 lnc-RP11-625H11.1.1-3:5
5.1 lnc-ICE2-61:10
5.2 lnc-RPS27L-9:10