Transcript: lnc-RPS27L-9:7

Basic information

LNCipedia transcript ID: lnc-RPS27L-9:7 
LNCipedia gene ID: lnc-RPS27L-9
Ensembl Gene ID: ENSG00000259370
Ensembl Transcript ID: ENST00000560963
Location (hg19): chr15:63134323-63136780
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 447 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560963.1; RP11-1069G10.1-004; OTTHUMT00000416588.1; NONHSAT046580
Alternative gene names: ENSG00000259370.1; RP11-1069G10.1; OTTHUMG00000172039.1; ENSG00000259370.2; AC103740.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.876 non-coding 
CPAT coding probability 4.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS27L-9:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-625H11.1.1-3:2
4.0 lnc-RP11-625H11.1.1-3:2
4.1 lnc-RP11-625H11.1.1-3:2
5.0 lnc-RP11-625H11.1.1-3:2
5.1 lnc-ICE2-61:7
5.2 lnc-RPS27L-9:7