Transcript: lnc-RPS4Y1-2:1

Basic information

LNCipedia transcript ID: lnc-RPS4Y1-2:1 
LNCipedia gene ID: lnc-RPS4Y1-2
Location (hg19): chrY:2477306-2506369
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1112 bp
Exons: 10
Sources: Broad Institute
Alternative transcript names: TCONS_00017567
Alternative gene names: XLOC_008274; linc-CD99-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.6337 non-coding 
CPAT coding probability 17.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS4Y1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS4Y1-1:1
3.1 lnc-RPS4Y1-2:1
4.0 lnc-RPS4Y1-2:1
4.1 lnc-RPS4Y1-2:1
5.0 lnc-RPS4Y1-2:1
5.1 lnc-TGIF2LY-7:1
5.2 lnc-RPS4Y1-2:1