Transcript: lnc-RPS4Y1-2:3

Basic information

LNCipedia transcript ID: lnc-RPS4Y1-2:3 
LNCipedia gene ID: lnc-RPS4Y1-2
Location (hg19): chrY:2477433-2525270
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2790 bp
Exons: 9
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017604; NONHSAT139283
Alternative gene names: XLOC_008274; linc-CD99-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.6191 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS4Y1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS4Y1-1:3
3.1 lnc-RPS4Y1-2:3
4.0 lnc-RPS4Y1-2:3
4.1 lnc-RPS4Y1-2:3
5.0 lnc-RPS4Y1-2:3
5.1 lnc-TGIF2LY-7:4
5.2 lnc-RPS4Y1-2:3