Transcript: lnc-RPS4Y1-7:1

Basic information

LNCipedia transcript ID: lnc-RPS4Y1-7:1 
LNCipedia gene ID: lnc-RPS4Y1-7
Location (hg19): chrY:900956-905100
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 588 bp
Exons: 2
Sources: Broad Institute; Gencode v13; NONCODE v4
Alternative transcript names: TCONS_00017600; ENSTR0000420865.1; RP11-309M23.1-001; OTTHUMT00000055588.1; NONHSAT139264
Alternative gene names: XLOC_008271; linc-CSF2RA-2; ENSGR0000237531.1; RP11-309M23.1; OTTHUMG00000021054.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.3211 non-coding 
CPAT coding probability 2.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS4Y1-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS4Y1-4:1
3.1 lnc-RPS4Y1-7:1
4.0 lnc-RPS4Y1-7:1
4.1 lnc-RPS4Y1-7:1
5.0 lnc-RPS4Y1-7:1
5.1 lnc-TGIF2LY-19:1
5.2 lnc-RPS4Y1-7:1