Transcript: lnc-RREB1-2:1

Basic information

LNCipedia transcript ID: lnc-RREB1-2:1 
LNCipedia gene ID: lnc-RREB1-2
Ensembl Gene ID: ENSG00000203498
Ensembl Transcript ID: ENST00000423568
Location (hg19): chr6:6993424-6995787
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011261; ENST00000423568; ENST00000423568.1; RP11-556O15.1-001; OTTHUMT00000039768.1; NONHSAT107585
Alternative gene names: XLOC_005153; linc-RREB1-1; ENSG00000203498; RP11-556O15.1; ENSG00000203498.2; OTTHUMG00000014196.1; AL139390.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.127 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RREB1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RREB1-1:1
3.1 lnc-RREB1-2:1
4.0 lnc-RREB1-2:1
4.1 lnc-RREB1-2:1
5.0 lnc-RREB1-2:1
5.1 lnc-PRPF4B-87:1
5.2 lnc-RREB1-2:1