Transcript: lnc-RTKN2-2:1

Basic information

LNCipedia transcript ID: lnc-RTKN2-2:1 
LNCipedia gene ID: lnc-RTKN2-2
RefSeq ID: NR_104162
Location (hg19): chr10:64099347-64134886
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2621 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000504060; NONHSAT013580; NR_104162; NR_104162.1
Alternative gene names: ENSG00000239604; AC024597.1; LOC283045


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.8583 non-coding 
CPAT coding probability 11.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTKN2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RTKN2-2:1
3.1 lnc-RTKN2-2:1
4.0 lnc-RTKN2-2:1
4.1 lnc-RTKN2-2:1
5.0 lnc-RTKN2-2:1
5.1 lnc-C10orf105-94:1
5.2 lnc-RTKN2-2:1