Transcript: lnc-RTL1-5:3

Basic information

LNCipedia transcript ID: lnc-RTL1-5:3 
LNCipedia gene ID: lnc-RTL1-5
Ensembl Gene ID: ENSG00000258460
Ensembl Transcript ID: ENST00000553561
Location (hg19): chr14:101798853-101800668
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553561; ENST00000553561.1; RP11-168L7.1-001; OTTHUMT00000414716.1
Alternative gene names: ENSG00000258460; RP11-168L7.1; ENSG00000258460.1; OTTHUMG00000171678.1; AL355096.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.1073 non-coding 
CPAT coding probability 18.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTL1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RTL1-4:3
3.1 lnc-RTL1-5:3
4.0 lnc-RTL1-5:3
4.1 lnc-RTL1-5:3
5.0 lnc-RTL1-5:3
5.1 lnc-HSP90AA1-20:3
5.2 lnc-RTL1-5:3