Transcript: lnc-RTP4-1:2

Basic information

LNCipedia transcript ID: lnc-RTP4-1:2 
LNCipedia gene ID: lnc-RTP4-1
Ensembl Gene ID: ENSG00000283175
Ensembl Transcript ID: ENST00000636210
RefSeq ID: NR_135551
Location (hg19): chr3:187009060-187015721
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1973 bp
Exons: 2
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000636210.1; NR_135551.1
Alternative gene names: ENSG00000283175.1; RP11-208N14.5; AC007920.2; LOC101929130


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.9997 non-coding 
CPAT coding probability 2.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTP4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RTP4-1:2
5.0 lnc-RTP4-1:2
5.1 lnc-FAM131A-48:2
5.2 lnc-RTP4-1:2