Transcript: lnc-RUBCN-1:1

Basic information

LNCipedia transcript ID: lnc-RUBCN-1:1 
LNCipedia gene ID: lnc-RUBCN-1
Ensembl Gene ID: ENSG00000236833
Ensembl Transcript ID: ENST00000424493
Location (hg19): chr3:197387436-197392628
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1471 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005934; ENST00000424493; ENST00000424493.1; AC024560.2-001; OTTHUMT00000340266.1; NONHSAT094437
Alternative gene names: XLOC_003407; linc-BDH1-1; ENSG00000236833; AC024560.2; ENSG00000236833.1; OTTHUMG00000155477.1; AC024560.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 56.7429 non-coding 
CPAT coding probability 11.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RUBCN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA0226-1:1
3.1 lnc-KIAA0226-1:1
4.0 lnc-KIAA0226-1:1
4.1 lnc-KIAA0226-1:1
5.0 lnc-KIAA0226-1:1
5.1 lnc-IQCG-21:1
5.2 lnc-RUBCN-1:1