Transcript: lnc-RUNX1T1-4:4

Basic information

LNCipedia transcript ID: lnc-RUNX1T1-4:4 
LNCipedia gene ID: lnc-RUNX1T1-4
Location (hg19): chr8:93483930-93513121
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 320 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015479; NONHSAT127702
Alternative gene names: XLOC_007155; linc-RUNX1T1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -283.9752 non-coding 
CPAT coding probability 14.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RUNX1T1-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RUNX1T1-3:4
3.1 lnc-RUNX1T1-4:4
4.0 lnc-RUNX1T1-4:4
4.1 lnc-RUNX1T1-4:4
5.0 lnc-RUNX1T1-4:4
5.1 lnc-ZNF706-190:4
5.2 lnc-RUNX1T1-4:4