Transcript: lnc-RUNX3-4:1

Basic information

LNCipedia transcript ID: lnc-RUNX3-4:1 
LNCipedia gene ID: lnc-RUNX3-4
Ensembl Gene ID: ENSG00000233755
Ensembl Transcript ID: ENST00000429666
Location (hg19): chr1:25436949-25439611
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 614 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000489; ENST00000429666; ENST00000429666.1; RP4-799D16.1-002; OTTHUMT00000009331.1; NONHSAT001685
Alternative gene names: XLOC_000745; linc-RUNX3; ENSG00000233755; RP4-799D16.1; ENSG00000233755.1; OTTHUMG00000003326.1; AL050344.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.3507 non-coding 
CPAT coding probability 14.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RUNX3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYF2-2:1
3.1 lnc-SYF2-2:1
4.0 lnc-RUNX3-4:1
4.1 lnc-RUNX3-4:1
5.0 lnc-RUNX3-4:1
5.1 lnc-CRYBG2-21:1
5.2 lnc-RUNX3-4:1