Transcript: lnc-RWDD3-5:1

Basic information

LNCipedia transcript ID: lnc-RWDD3-5:1 
LNCipedia gene ID: lnc-RWDD3-5
Location (hg19): chr1:95975716-95980285
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 782 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000440116; ENST00000440116.1; RP11-286B14.1-003; OTTHUMT00000030151.1
Alternative gene names: ENSG00000228971; RP11-286B14.1; ENSG00000228971.1; OTTHUMG00000010665.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.7475 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RWDD3-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RWDD3-4:1
3.1 lnc-RWDD3-5:1
4.0 lnc-RWDD3-5:1
4.1 lnc-RWDD3-5:1
5.0 lnc-RWDD3-5:1
5.1 lnc-BTBD8-49:9
5.2 lnc-RWDD3-5:1