Transcript: lnc-RWDD3-5:3

Basic information

LNCipedia transcript ID: lnc-RWDD3-5:3 
LNCipedia gene ID: lnc-RWDD3-5
Location (hg19): chr1:95975726-96088290
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 319 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000432146; ENST00000432146.1; RP11-286B14.1-002; OTTHUMT00000030150.1; NONHSAT004674
Alternative gene names: ENSG00000228971; RP11-286B14.1; ENSG00000228971.1; OTTHUMG00000010665.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -479.1341 non-coding 
CPAT coding probability 6.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RWDD3-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RWDD3-4:3
3.1 lnc-RWDD3-5:3
4.0 lnc-RWDD3-5:3
4.1 lnc-RWDD3-5:3
5.0 lnc-RWDD3-5:3
5.1 lnc-BTBD8-49:11
5.2 lnc-RWDD3-5:3