Transcript: lnc-RYBP-2:1

Basic information

LNCipedia transcript ID: lnc-RYBP-2:1 
LNCipedia gene ID: lnc-RYBP-2
Ensembl Gene ID: ENSG00000244345
Ensembl Transcript ID: ENST00000478745
Location (hg19): chr3:72553957-72599703
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 866 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005788; ENST00000478745; ENST00000478745.1; RP11-654C22.2-001; OTTHUMT00000353763.1; NONHSAT090455
Alternative gene names: XLOC_003160; linc-RYBP-1; ENSG00000244345; RP11-654C22.2; ENSG00000244345.1; OTTHUMG00000159191.1; AC104435.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.0933 non-coding 
CPAT coding probability 10.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RYBP-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RYBP-1:1
3.1 lnc-RYBP-2:1
4.0 lnc-RYBP-2:1
4.1 lnc-RYBP-2:1
5.0 lnc-RYBP-2:1
5.1 lnc-FOXP1-17:1
5.2 lnc-RYBP-2:1