Transcript: lnc-S100A13-1:1

Basic information

LNCipedia transcript ID: lnc-S100A13-1:1 
LNCipedia gene ID: lnc-S100A13-1
Location (hg19): chr1:153615538-153618305
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 357 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000446229.1; RP1-178F15.3-001; OTTHUMT00000089972.1; NONHSAT006534
Alternative gene names: ENSG00000233059.1; RP1-178F15.3; OTTHUMG00000037053.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.5186 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-S100A13-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-S100A13-1:1
4.0 lnc-S100A13-1:1
4.1 lnc-S100A13-1:1
5.0 lnc-S100A13-1:1
5.1 lnc-S100A14-4:1
5.2 lnc-S100A13-1:1